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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
Assay category
72
Transcription
Date released
89
February, 2021
57
August, 2021
6
May, 2022
4
February, 2023
1
October, 2022
Available data
3039
bam
2837
bigWig
1620
bed narrowPeak
1460
tsv
1210
fastq
973
bigBed narrowPeak
343
tagAlign
274
bed broadPeak
250
bigBed broadPeak
214
bed bed3+
157
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
156
Homo sapiens
Biosample type
156
tissue
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
musculature of body
Project
157
AMP
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
target.investigated_as!
other context
organ_slims!
musculature of body
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
157 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 2 more…
cell line
MIN6
1
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