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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
40
ChIP-seq
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
287
DNA accessibility
57
DNA methylation
40
DNA binding
10
3D chromatin structure
Target of assay
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
33
June, 2019
28
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
401
bam
380
bigWig
336
fastq
268
tsv
153
zippedFastqFolder
78
bed narrowPeak
61
bigBed narrowPeak
33
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
845
Homo sapiens
Biosample type
2090
tissue
845
primary cell
622
cell line
282
in vitro differentiated cells
8
stem cell
Organ
340
epithelium
288
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
400
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
394
hg19
335
GRCh38
Lab
395
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
target.investigated_as!
other context
histone
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
845 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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