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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
14
RRBS
12
WGBS
9
ATAC-seq
8
Hi-C
2
FAIRE-seq
Assay category
120
Transcription
26
DNA methylation
11
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
411
August, 2017
404
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
106
July, 2019
94
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
87
bigWig
81
bam
64
tsv
41
fastq
22
bed bedMethyl
22
bigBed bedMethyl
19
zippedFastqFolder
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
165
Homo sapiens
Biosample type
89
primary cell
76
tissue
Organ
32
epithelium
25
heart
25
pancreas
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
pericardium
1
eye
Project
106
AMP
59
HPAP
Genome assembly (visualization)
89
hg19
81
GRCh38
Lab
106
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
target.investigated_as!
other context
organ_slims!
pericardium
BIOSAMPLE
ASSAY
165 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 22 more…
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 25 more…
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