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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
17
ChIP-seq
13
ATAC-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
62
Transcription
17
DNA binding
14
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
8
February, 2023
7
December, 2018
7
January, 2019
6
November, 2018
1
March, 2020
1
May, 2021
1
October, 2017
Available data
88
txt
87
bam
71
bigWig
59
tsv
21
fastq
19
bed narrowPeak
10
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
181
Homo sapiens
Biosample type
180
tissue
1
primary cell
Organ
946
pancreas
789
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
22
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
180
AMP
1
T1D
Genome assembly (visualization)
81
hg19
79
GRCh38
Lab
180
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
other context
BIOSAMPLE
ASSAY
181 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
spleen
17
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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