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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
11
ATAC-seq
3
Hi-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
42
Transcription
13
DNA accessibility
3
3D chromatin structure
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
37
fastq
3
bedpe bed3+
3
cool
3
hic
Organism
58
Homo sapiens
Biosample type
40
primary cell
18
tissue
1
cell line
Organ
59
pancreas
55
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
40
HPAP
18
T1D
1
AMP
Genome assembly (visualization)
3
hg19
Lab
40
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Audit category:
3
audit script error
target.investigated_as!
other context
BIOSAMPLE
ASSAY
59 results
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Clear Filters
total RNA-seq
ATAC-seq
Hi-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
1
pancreatic beta cell
10
1
pancreatic acinar cell
1
tissue
islet of Langerhans
5
11
2
cell line
EndoC_BH1
1
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