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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
132
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
149
DNA binding
134
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
116
May, 2021
46
August, 2017
42
August, 2021
39
February, 2018
32
December, 2017
26
February, 2021
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
219
bigWig
131
tsv
108
fastq
98
bed narrowPeak
36
tagAlign
15
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
329
Homo sapiens
Biosample type
2588
tissue
990
primary cell
329
in vitro differentiated cells
295
cell line
10
stem cell
Organ
62
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
329
AMP
Genome assembly (visualization)
248
hg19
228
GRCh38
4
hg18
Lab
290
AMP-T2D consortium
35
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
other context
transcription factor
month_released!
February, 2023
BIOSAMPLE
ASSAY
329 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
45
4
7
1
1
embryonic stem cell
28
7
5
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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