Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
469
DNA binding
Target of assay
349
transcription factor
88
recombinant protein
80
control
63
RNA binding protein
37
histone
37
histone modification
24
chromatin remodeller
19
broad histone mark
18
narrow histone mark
2
other context
other post-translational modification
Date released
303
November, 2017
57
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
450
bam
405
fastq
397
bigWig
378
bed narrowPeak
339
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
20
tagAlign
3
tar
Organism
469
Homo sapiens
Biosample type
878
tissue
469
cell line
235
primary cell
192
in vitro differentiated cells
3
stem cell
Organ
363
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
467
AMP
2
T1D
Genome assembly (visualization)
393
hg19
339
GRCh38
Lab
451
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
missing controlled_by
Audit category:
21
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
other post-translational modification
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
469 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
363
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
See all biosamples
Download