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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
40
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
123
DNA binding
42
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
38
June, 2019
25
May, 2019
17
July, 2019
15
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
177
bigWig
173
bam
159
bed narrowPeak
83
bigBed narrowPeak
55
bed broadPeak
46
bigBed broadPeak
43
bed bed3+
43
tagAlign
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
182
Homo sapiens
Biosample type
161
tissue
21
primary cell
Organ
658
pancreas
623
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
12
skeleton
11
spleen
2
pericardium
1
pituitary gland
Project
182
AMP
Genome assembly (visualization)
235
GRCh38
182
hg19
Lab
182
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
renal pelvis
10
frontal cortex
2
1
1
1
+ See 69 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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