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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
113
ChIP-seq
2
ATAC-seq
Assay category
113
DNA binding
2
DNA accessibility
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
69
November, 2017
39
August, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
3178
bam
2915
bigWig
1600
tsv
1563
bed narrowPeak
1341
fastq
828
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
115
bed broadPeak
78
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
109
Homo sapiens
Biosample type
57
cell line
37
tissue
21
primary cell
Organ
57
liver
15
brain
14
pancreas
13
musculature of body
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
115
AMP
Genome assembly (visualization)
114
hg19
76
GRCh38
Lab
113
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
other post-translational modification
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
115 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
57
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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