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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
1
Hi-C
Assay category
438
DNA binding
1
3D chromatin structure
Target of assay
272
transcription factor
88
histone
88
histone modification
75
control
66
recombinant protein
50
broad histone mark
39
RNA binding protein
38
narrow histone mark
17
chromatin remodeller
2
other context
other post-translational modification
Date released
715
February, 2021
411
August, 2017
404
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
424
bam
362
bigWig
357
fastq
341
bed narrowPeak
340
bigBed narrowPeak
78
tagAlign
69
bed broadPeak
63
bigBed broadPeak
3
tar
Organism
439
Homo sapiens
Biosample type
341
cell line
89
tissue
9
primary cell
Organ
314
liver
91
brain
27
blood
27
bodily fluid
7
spleen
6
epithelium
6
vasculature
3
blood vessel
Project
439
AMP
Genome assembly (visualization)
309
hg19
308
GRCh38
Lab
439
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
other post-translational modification
month_released!
September, 2020
BIOSAMPLE
ASSAY
439 results
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Clear Filters
ChIP-seq
Hi-C
cell line
HepG2
313
1
GM12878
27
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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