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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
81
DNA accessibility
58
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
134
zippedFastqFolder
38
bed narrowPeak
bam
24
fastq
20
bigWig
7
txt
1
bed bed3+
1
hic
Organism
177
Homo sapiens
Biosample type
135
primary cell
42
tissue
2
cell line
2
stem cell
Organ
80
epithelium
80
pancreas
40
liver
2
musculature of body
Project
134
HPAP
42
AMP
4
community
1
ITG
Genome assembly (visualization)
21
hg19
1
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
1
audit script error
target.investigated_as!
other post-translational modification
files.file_type!
bam
BIOSAMPLE
ASSAY
181 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
chondrocytes
1
tissue
liver
20
20
skeletal muscle tissue
1
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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