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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
46
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
other post-translational modification
Date released
715
February, 2021
403
August, 2017
394
May, 2021
367
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
65
October, 2018
64
March, 2020
64
November, 2018
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
64
fastq
63
bam
56
bigWig
49
bed narrowPeak
49
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
64
Homo sapiens
Biosample type
40
cell line
23
tissue
1
primary cell
Organ
34
liver
13
blood
13
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
64
AMP
Genome assembly (visualization)
55
GRCh38
47
hg19
Lab
64
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
other post-translational modification
RNA binding protein
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
26
1
GM12878
13
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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