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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
133
total RNA-seq
86
RNA microarray
27
snATAC-seq
24
pCHi-C
21
WGBS
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
324
DNA binding
307
Transcription
182
DNA accessibility
23
DNA methylation
5
3D chromatin structure
Target of assay
160
control
160
histone
160
histone modification
85
broad histone mark
75
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
227
August, 2021
93
February, 2021
79
October, 2019
76
November, 2017
62
August, 2017
62
February, 2023
47
September, 2023
40
May, 2024
27
May, 2022
23
February, 2020
23
May, 2020
22
May, 2019
21
March, 2020
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
11
October, 2018
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
238
bam
207
bed narrowPeak
156
txt
155
tsv
126
tagAlign
123
bigWig
68
bigBed narrowPeak
64
xls
61
fastq
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
14
bed bedMethyl
14
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
956
Homo sapiens
Biosample type
958
tissue
460
primary cell
132
cell line
96
in vitro differentiated cells
7
stem cell
Organ
207
kidney
200
heart
122
brain
93
liver
92
pancreas
88
bone element
65
connective tissue
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
863
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1434
GRCh38
hg19
Lab
649
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
target.investigated_as!
other post-translational modification
organ_slims!
adipose tissue
assembly!
hg19
BIOSAMPLE
ASSAY
958 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
liver
62
1
20
1
3
bone element
84
left cardiac atrium
40
18
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