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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
676
ChIP-seq
470
total RNA-seq
233
ATAC-seq
173
single cell RNA-seq
172
DNase-seq
86
RNA microarray
28
snATAC-seq
23
pCHi-C
17
WGBS
15
Hi-C
11
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
676
DNA binding
654
Transcription
437
DNA accessibility
27
DNA methylation
15
3D chromatin structure
Target of assay
526
histone
526
histone modification
268
narrow histone mark
258
broad histone mark
117
control
38
transcription factor
21
RNA binding protein
3
other context
other post-translational modification
2
nucleotide modification
Date released
235
October, 2019
228
August, 2021
173
August, 2017
162
June, 2019
158
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
59
July, 2019
51
October, 2018
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
36
March, 2020
26
May, 2022
22
February, 2020
22
October, 2017
19
April, 2020
15
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1176
bam
1081
bigWig
855
bed narrowPeak
523
tsv
499
bigBed narrowPeak
248
fastq
207
bed broadPeak
193
bed bed3+
171
bigBed broadPeak
160
tagAlign
157
txt
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1917
Homo sapiens
Biosample type
1925
tissue
1072
primary cell
378
in vitro differentiated cells
261
cell line
10
stem cell
Organ
547
connective tissue
505
pancreas
adipose tissue
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1828
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1196
GRCh38
1060
hg19
Lab
1613
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
other post-translational modification
organ_slims!
adipose tissue
liver
BIOSAMPLE
ASSAY
1925 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
298
68
1
7
4
3
1
1
4
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
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