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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
129
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
214
bigWig
199
bam
185
bed narrowPeak
164
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
380
Homo sapiens
Biosample type
313
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
775
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
22
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
380
AMP
Genome assembly (visualization)
256
GRCh38
178
hg19
Lab
340
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
target.investigated_as!
other post-translational modification
biosample_type!
primary cell
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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