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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
140
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
Target of assay
162
histone modification
161
histone
broad histone mark
72
narrow histone mark
42
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
689
February, 2021
354
November, 2017
341
May, 2020
275
August, 2021
254
August, 2017
251
October, 2019
210
June, 2019
201
May, 2021
200
May, 2022
189
February, 2023
168
July, 2018
108
July, 2019
85
November, 2018
62
May, 2019
59
September, 2020
57
October, 2018
56
March, 2020
56
September, 2018
50
November, 2019
49
April, 2018
47
December, 2017
47
September, 2023
43
April, 2019
35
December, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
196
fastq
191
bam
175
bigWig
89
tsv
55
bed narrowPeak
34
tagAlign
23
bigBed narrowPeak
20
bed bed3+
18
bed broadPeak
8
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
251
Homo sapiens
Biosample type
211
tissue
in vitro differentiated cells
43
primary cell
Organ
156
pancreas
37
adipose tissue
37
connective tissue
35
liver
23
epithelium
14
musculature of body
Project
254
AMP
Genome assembly (visualization)
178
hg19
163
GRCh38
Lab
254
AMP-T2D consortium
Audit category:
29
missing controlled_by
Audit category:
7
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
other post-translational modification
broad histone mark
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
254 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
28
89
1
1
liver
29
3
1
subcutaneous abdominal adipose tissue
16
3
skeletal muscle tissue
10
4
white adipose tissue
12
+ See 4 more…
primary cell
skeletal muscle myoblast
9
1
2
pancreatic alpha cell
10
1
pancreatic beta cell
10
1
pancreatic endocrine cell
8
pancreatic acinar cell
1
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