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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
17
ATAC-seq
9
total RNA-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
30
DNA binding
18
DNA accessibility
9
Transcription
Target of assay
37
histone
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
31
August, 2017
13
February, 2023
8
February, 2021
4
August, 2021
2
October, 2019
1
August, 2018
1
May, 2021
Available data
34
bam
32
bigWig
30
fastq
20
bed narrowPeak
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
2
tagAlign
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
60
Homo sapiens
Biosample type
514
tissue
60
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
60
connective tissue
17
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
60
AMP
Genome assembly (visualization)
48
hg19
29
GRCh38
Lab
56
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
other post-translational modification
histone modification
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
30
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
cardiac fibroblast
1
white fat cell
1
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