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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
total RNA-seq
45
ChIP-seq
2
Hi-C
1
single cell RNA-seq
Assay category
47
Transcription
45
DNA binding
DNA accessibility
2
3D chromatin structure
Target of assay
42
histone
42
histone modification
23
broad histone mark
19
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
666
February, 2021
400
August, 2017
365
May, 2021
340
November, 2017
274
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
62
November, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
91
bam
89
bigWig
59
fastq
46
tsv
43
bed narrowPeak
2
bedpe bed3+
2
hic
1
csv
Organism
94
Homo sapiens
Biosample type
59
primary cell
20
tissue
15
cell line
Organ
93
pancreas
62
epithelium
Project
94
AMP
Genome assembly (visualization)
91
hg19
89
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
32
missing controlled_by
target.investigated_as!
recombinant protein
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
4
13
pancreatic endocrine cell
11
pancreatic acinar cell
2
8
pancreatic alpha cell
10
pancreatic beta cell
10
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tissue
islet of Langerhans
19
1
cell line
EndoC_BH1
1
13
1
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