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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ChIP-seq
Assay category
221
DNA binding
Target of assay
216
histone
216
histone modification
137
narrow histone mark
79
broad histone mark
4
transcription factor
1
control
Date released
89
May, 2021
40
October, 2019
38
August, 2017
27
May, 2020
15
August, 2021
6
November, 2017
6
October, 2017
Available data
2499
bigWig
2489
bam
1297
tsv
1198
bed narrowPeak
641
fastq
612
bigBed narrowPeak
247
bed bed3+
239
bed broadPeak
221
tagAlign
203
bigBed broadPeak
20
hic
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
11
bed bed3
7
bed bedgraph
4
hdf5
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
215
Homo sapiens
Biosample type
105
tissue
99
primary cell
cell line
17
in vitro differentiated cells
Organ
43
brain
30
liver
14
pancreas
13
musculature of body
5
epithelium
1
adipose tissue
1
connective tissue
1
pituitary gland
Project
137
AMP
84
T1D
Genome assembly (visualization)
232
GRCh38
221
hg19
Lab
137
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
2
inconsistent assembly
target.investigated_as!
recombinant protein
biosample_type!
cell line
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
tissue
liver
27
skeletal muscle tissue
13
brain
6
islet of Langerhans
6
pancreas
6
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
12
cardiomyocytes
3
pancreatic PP cell
2
See all biosamples
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