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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
Assay category
50
DNA binding
Target of assay
26
histone
26
histone modification
25
transcription factor
15
broad histone mark
13
chromatin remodeller
11
narrow histone mark
6
RNA binding protein
recombinant protein
Date released
20
November, 2017
11
August, 2017
11
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
50
bam
50
bigWig
50
fastq
48
bed narrowPeak
29
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
50
Homo sapiens
Biosample type
25
cell line
17
in vitro differentiated cells
6
tissue
primary cell
2
stem cell
Organ
26
liver
6
connective tissue
5
pancreas
3
embryo
1
epithelium
Project
50
AMP
Genome assembly (visualization)
50
hg19
46
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
50
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
target.investigated_as!
recombinant protein
biosample_type!
primary cell
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
cell line
HepG2
25
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
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