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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
189
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
384
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
237
November, 2017
144
May, 2020
63
December, 2017
34
November, 2018
32
August, 2017
31
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
591
bam
515
bigWig
379
fastq
332
bed narrowPeak
271
bigBed narrowPeak
174
tsv
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
594
Homo sapiens
Biosample type
306
cell line
266
tissue
15
in vitro differentiated cells
7
primary cell
Organ
754
pancreas
628
connective tissue
594
liver
475
adipose tissue
394
epithelium
310
heart
184
kidney
172
vasculature
168
blood vessel
147
bone element
131
brain
86
artery
78
limb
60
blood
60
bodily fluid
46
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
594
AMP
Genome assembly (visualization)
477
hg19
411
GRCh38
Lab
543
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
recombinant protein
files.file_type!
tagAlign
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
594 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
284
14
1
2
2
2
1
tissue
liver
75
167
3
1
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
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