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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
25
total RNA-seq
19
ChIP-seq
12
ATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
Transcription
19
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
699
February, 2021
326
August, 2017
309
May, 2021
291
May, 2020
262
November, 2017
235
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
165
August, 2021
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
76
October, 2018
73
September, 2018
72
November, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
9
October, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
123
tsv
49
bam
47
bigWig
42
bed narrowPeak
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
164
Homo sapiens
Biosample type
101
tissue
42
cell line
22
in vitro differentiated cells
Organ
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
165
AMP
Genome assembly (visualization)
44
hg19
25
GRCh38
Lab
127
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
recombinant protein
files.file_type!
tagAlign
organ_slims!
kidney
BIOSAMPLE
ASSAY
165 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
1
10
adipocyte
1
1
osteoblast
1
1
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