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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
DNase-seq
39
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
52
DNA accessibility
39
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
61
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
86
bigWig
78
bed narrowPeak
75
bam
65
bigBed narrowPeak
64
bed broadPeak
52
bed bed3+
51
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
txt
Organism
113
Homo sapiens
Biosample type
99
tissue
14
primary cell
Organ
940
pancreas
709
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
286
brain
285
kidney
236
vasculature
230
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
90
hg19
71
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
target.investigated_as!
recombinant protein
files.file_type!
txt
BIOSAMPLE
ASSAY
113 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
13
7
1
muscle of arm
17
renal pelvis
10
gastrocnemius medialis
4
1
+ See 6 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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