Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
51
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
50
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
75
bigWig
69
bed narrowPeak
63
bed broadPeak
62
bam
56
bigBed narrowPeak
51
bed bed3+
50
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
txt
Organism
99
Homo sapiens
Biosample type
99
tissue
14
primary cell
Organ
547
connective tissue
499
pancreas
488
adipose tissue
361
liver
313
heart
265
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
Genome assembly (visualization)
78
hg19
60
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
recombinant protein
files.file_type!
txt
BIOSAMPLE
ASSAY
99 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
13
7
1
muscle of arm
17
renal pelvis
10
gastrocnemius medialis
4
1
+ See 6 more…
See all biosamples
Download