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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
452
DNA binding
184
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
37
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
599
bam
527
bigWig
383
fastq
346
bed narrowPeak
277
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
678
Homo sapiens
Biosample type
361
tissue
288
cell line
15
in vitro differentiated cells
14
primary cell
Organ
942
pancreas
684
connective tissue
678
liver
524
epithelium
491
adipose tissue
353
heart
345
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
678
AMP
Genome assembly (visualization)
532
hg19
450
GRCh38
Lab
638
AMP-T2D consortium
40
Karen Mohlke, UNC
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
recombinant protein
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
678 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
145
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
278
5
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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