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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
14
total RNA-seq
4
DNase-seq
1
GRO-seq
Assay category
16
DNA binding
14
Transcription
4
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
10
February, 2018
8
August, 2021
8
December, 2017
6
June, 2019
2
May, 2021
1
January, 2018
Available data
47
bed narrowPeak
43
bam
35
bigWig
27
fastq
19
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
3
primary cell
3
tissue
Organ
623
pancreas
570
connective tissue
541
liver
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
124
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
35
AMP
Genome assembly (visualization)
34
GRCh38
34
hg19
1
hg18
Lab
35
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
target.investigated_as!
recombinant protein
month_released!
January, 2021
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
2
1
tissue
retina
3
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