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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
6
single cell RNA-seq
2
FAIRE-seq
Assay category
68
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
689
February, 2021
343
August, 2017
341
May, 2020
340
November, 2017
299
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
88
bigWig
85
bam
68
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
3
fastq
2
bigBed narrowPeak
Organism
111
Homo sapiens
Biosample type
77
tissue
34
primary cell
in vitro differentiated cells
Organ
25
heart
18
brain
18
connective tissue
16
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
9
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
111
AMP
Genome assembly (visualization)
94
hg19
82
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
recombinant protein
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
111 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 22 more…
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