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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
3
single cell RNA-seq
1
Hi-C
1
pCHi-C
Assay category
128
DNA binding
3
Transcription
1
3D chromatin structure
Target of assay
70
transcription factor
31
histone
31
histone modification
25
control
16
narrow histone mark
15
broad histone mark
6
RNA binding protein
5
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
340
November, 2017
319
August, 2021
307
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
133
fastq
131
bam
105
bigWig
102
bed narrowPeak
80
bigBed narrowPeak
15
bed bed3+
3
tsv
1
bedpe bed3+
Organism
133
Homo sapiens
Biosample type
55
tissue
44
in vitro differentiated cells
28
cell line
3
primary cell
3
stem cell
Organ
64
liver
27
blood
27
bodily fluid
22
epithelium
13
embryo
7
spleen
3
pancreas
1
adipose tissue
1
connective tissue
Project
133
AMP
Genome assembly (visualization)
110
GRCh38
110
hg19
Lab
133
AMP-T2D consortium
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
133 results
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Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
liver
38
right lobe of liver
10
spleen
7
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 2 more…
cell line
GM12878
27
HepG2
1
primary cell
pancreatic alpha cell
2
pancreatic acinar cell
1
stem cell
hESC
3
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