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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
ChIP-seq
163
total RNA-seq
41
DNase-seq
11
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
326
DNA binding
166
Transcription
52
DNA accessibility
2
DNA methylation
Target of assay
286
transcription factor
117
histone modification
116
histone
recombinant protein
62
broad histone mark
54
narrow histone mark
51
RNA binding protein
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
162
May, 2020
151
November, 2017
59
October, 2019
50
December, 2017
37
November, 2018
34
June, 2019
19
August, 2017
8
July, 2019
7
February, 2021
5
December, 2019
5
January, 2019
5
May, 2019
3
August, 2021
1
March, 2020
Available data
546
bam
537
bigWig
377
bed narrowPeak
328
bigBed narrowPeak
262
fastq
166
tsv
85
bed broadPeak
85
bigBed broadPeak
47
bed bed3+
31
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
546
Homo sapiens
Biosample type
334
tissue
187
cell line
14
in vitro differentiated cells
11
primary cell
Organ
635
pancreas
566
connective tissue
450
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
198
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
546
AMP
Genome assembly (visualization)
643
hg19
546
GRCh38
Lab
546
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
546 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
75
147
2
1
tibial nerve
24
4
2
1
tibial artery
18
2
1
muscle of leg
5
13
1
muscle of arm
17
+ See 9 more…
cell line
HepG2
180
5
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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