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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
470
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
37
November, 2018
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
599
bam
541
bigWig
383
fastq
360
bed narrowPeak
277
bigBed narrowPeak
172
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
706
Homo sapiens
Biosample type
360
tissue
317
cell line
15
in vitro differentiated cells
14
primary cell
Organ
945
pancreas
706
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
345
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
706
AMP
Genome assembly (visualization)
546
hg19
450
GRCh38
Lab
635
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
recombinant protein
organ_slims!
gonad
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
706 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
296
14
1
1
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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