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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
Assay category
256
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
175
November, 2017
33
December, 2017
33
November, 2018
11
August, 2021
4
August, 2017
Available data
252
bigWig
248
bed narrowPeak
245
fastq
244
bam
233
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
3
tar
2
bed bed3+
Organism
256
Homo sapiens
Biosample type
215
cell line
39
tissue
2
in vitro differentiated cells
Organ
256
liver
51
blood
51
bodily fluid
40
connective tissue
19
pancreas
17
adipose tissue
12
heart
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
3
kidney
1
eye
Project
256
AMP
Genome assembly (visualization)
251
hg19
205
GRCh38
Lab
245
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
cell line
HepG2
215
tissue
liver
37
right lobe of liver
2
in vitro differentiated cells
hepatocyte
2
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