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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
397
Transcription
8
DNA accessibility
Date released
120
July, 2018
90
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
4
June, 2019
2
July, 2019
2
November, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
October, 2019
Available data
338
bam
332
bigWig
326
tsv
181
fastq
8
bed narrowPeak
8
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
txt
Organism
405
Homo sapiens
Biosample type
290
tissue
81
primary cell
34
cell line
Organ
483
connective tissue
405
pancreas
400
adipose tissue
195
liver
150
epithelium
141
kidney
102
heart
72
vasculature
70
blood vessel
62
bone element
60
artery
49
brain
43
limb
39
musculature of body
23
eye
18
ureter
14
embryo
7
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
1
spleen
Project
343
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
332
GRCh38
330
hg19
Lab
339
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
405 results
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Clear Filters
total RNA-seq
DNase-seq
tissue
islet of Langerhans
278
1
body of pancreas
3
4
pancreas
2
2
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
Panc1
1
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