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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
15
ChIP-seq
8
ATAC-seq
4
Hi-C
1
RRBS
Assay category
54
Transcription
15
DNA binding
8
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
6
control
5
histone
5
histone modification
4
broad histone mark
4
transcription factor
1
narrow histone mark
Date released
66
February, 2021
8
October, 2019
5
July, 2019
2
November, 2017
1
March, 2020
Available data
98
bam
85
bigWig
54
tsv
33
bed narrowPeak
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
82
Homo sapiens
Biosample type
tissue
66
cell line
16
primary cell
Organ
433
epithelium
412
pancreas
120
liver
119
connective tissue
82
vasculature
80
blood vessel
74
heart
68
artery
37
embryo
31
kidney
15
blood
15
bodily fluid
10
brain
9
vein
5
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
82
AMP
Genome assembly (visualization)
75
hg19
66
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
recombinant protein
files.file_type!
bigBed narrowPeak
biosample_type!
tissue
BIOSAMPLE
ASSAY
82 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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