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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
393
DNA binding
193
Transcription
24
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
chromatin remodeller
1
other context
1
other post-translational modification
Date released
194
May, 2020
180
November, 2017
60
December, 2017
54
August, 2017
40
May, 2022
35
August, 2021
29
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
576
bam
518
bigWig
360
fastq
337
bed narrowPeak
254
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
627
Homo sapiens
Biosample type
356
tissue
245
cell line
14
in vitro differentiated cells
12
primary cell
Organ
925
pancreas
672
connective tissue
627
liver
501
epithelium
488
adipose tissue
363
heart
269
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
59
blood
59
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
627
AMP
Genome assembly (visualization)
465
hg19
384
GRCh38
Lab
556
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
recombinant protein
chromatin remodeller
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
627 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
143
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
222
14
1
1
2
2
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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