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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
309
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
309
DNA binding
28
DNA accessibility
Target of assay
329
transcription factor
81
histone modification
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
29
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
168
November, 2017
47
December, 2017
31
November, 2018
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
576
bam
518
bigWig
360
fastq
337
bed narrowPeak
254
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
337
Homo sapiens
Biosample type
207
cell line
111
tissue
13
in vitro differentiated cells
6
primary cell
Organ
337
liver
214
pancreas
203
brain
191
heart
176
kidney
150
epithelium
133
vasculature
129
blood vessel
92
limb
74
artery
73
connective tissue
60
musculature of body
44
blood
44
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
337
AMP
Genome assembly (visualization)
336
hg19
265
GRCh38
Lab
303
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
target.investigated_as!
recombinant protein
chromatin remodeller
BIOSAMPLE
ASSAY
337 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
206
1
tissue
liver
80
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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