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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
9
DNA accessibility
9
DNA binding
Target of assay
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
8
January, 2021
4
January, 2019
3
November, 2018
2
December, 2018
1
January, 2018
Available data
9
bam
9
fastq
4
bigWig
3
bed narrowPeak
3
bigBed narrowPeak
Organism
18
Homo sapiens
Biosample type
10
cell line
8
primary cell
Organ
919
pancreas
635
connective tissue
496
epithelium
472
adipose tissue
447
liver
311
heart
263
kidney
251
brain
216
vasculature
213
blood vessel
159
bone element
132
artery
86
limb
63
musculature of body
56
eye
41
nerve
34
embryo
20
lung
20
vein
18
blood
18
bodily fluid
18
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
10
AMP
8
T1D
Genome assembly (visualization)
4
hg19
3
GRCh38
Lab
10
AMP-T2D consortium
8
Kyle Gaulton, UCSD
target.investigated_as!
transcription factor
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
9
1
primary cell
peripheral blood mononuclear cell
8
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