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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
56
ChIP-seq
6
ATAC-seq
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
56
DNA binding
8
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
39
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
423
bam
406
bigWig
401
tsv
24
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bigBed broadPeak
1
bedpe bed3+
Organism
467
Homo sapiens
Biosample type
465
tissue
2
primary cell
1
in vitro differentiated cells
Organ
876
pancreas
638
connective tissue
468
adipose tissue
468
epithelium
448
liver
344
kidney
333
heart
283
brain
225
vasculature
220
blood vessel
159
bone element
136
artery
121
limb
95
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
468
AMP
Genome assembly (visualization)
409
hg19
405
GRCh38
Lab
468
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
assay_title!
WGBS
BIOSAMPLE
ASSAY
468 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
2
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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