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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
3
Hi-C
Assay category
60
DNA accessibility
51
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
18
September, 2020
3
October, 2022
Available data
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
155
Homo sapiens
Biosample type
155
primary cell
Organ
83
epithelium
83
pancreas
Project
155
HPAP
Genome assembly (visualization)
3
hg19
Lab
2678
AMP-T2D consortium
290
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
target.investigated_as!
transcription factor
assay_title!
pCHi-C
files.file_type!
fastq
BIOSAMPLE
ASSAY
155 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
51
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
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