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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
364
total RNA-seq
172
ChIP-seq
133
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
7
DNase-seq
7
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
133
DNA accessibility
Date released
57
May, 2022
19
November, 2019
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
3
August, 2017
3
October, 2019
3
September, 2020
2
March, 2020
Available data
64
bam
63
bed narrowPeak
56
fastq
39
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
133
Homo sapiens
Biosample type
71
primary cell
62
tissue
cell line
Organ
133
pancreas
84
epithelium
75
kidney
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
25
connective tissue
22
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
73
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
68
hg19
58
GRCh38
Lab
50
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
target.investigated_as!
transcription factor
biosample_type!
cell line
BIOSAMPLE
ASSAY
133 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
58
body of pancreas
4
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