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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
173
single cell RNA-seq
133
total RNA-seq
101
ATAC-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
11
WGBS
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
306
Transcription
292
DNA binding
133
DNA accessibility
18
DNA methylation
10
3D chromatin structure
Target of assay
180
control
114
histone
114
histone modification
65
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
transcription factor
Date released
165
August, 2021
100
August, 2017
93
February, 2021
81
October, 2019
64
May, 2022
60
February, 2023
47
September, 2023
31
May, 2020
29
October, 2018
28
March, 2020
25
November, 2017
23
February, 2020
21
May, 2019
19
April, 2020
15
April, 2019
12
December, 2017
12
July, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
May, 2021
1
August, 2022
1
January, 2018
1
January, 2019
1
November, 2019
Available data
201
bam
156
tsv
156
txt
107
tagAlign
95
fastq
87
bed narrowPeak
45
bigWig
9
bed broadPeak
9
hic
8
bedpe bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bedpe
Organism
874
Homo sapiens
Biosample type
877
tissue
548
primary cell
146
cell line
117
in vitro differentiated cells
7
stem cell
Organ
133
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
782
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1606
hg19
Lab
643
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
target.investigated_as!
transcription factor
assembly!
GRCh38
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
877 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
32
46
7
4
3
1
1
4
kidney
6
64
49
6
1
1
1
liver
70
1
20
20
1
3
1
1
bone element
84
subcutaneous abdominal adipose tissue
36
3
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