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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
44
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
25
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
6
July, 2019
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
25
bam
14
tsv
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
66
Homo sapiens
Biosample type
59
tissue
7
primary cell
Organ
310
pancreas
229
epithelium
208
liver
147
kidney
121
heart
118
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
41
musculature of body
34
vasculature
32
blood vessel
24
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
GRCh38
136
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
transcription factor
assembly!
GRCh38
month_released!
May, 2019
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 18 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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