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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
30
total RNA-seq
20
ATAC-seq
10
single cell RNA-seq
10
snATAC-seq
4
Hi-C
4
WGBS
4
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
140
DNA binding
40
Transcription
31
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
58
November, 2017
40
May, 2022
35
August, 2017
32
May, 2020
21
August, 2021
19
April, 2020
13
December, 2017
3
July, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
110
bam
81
fastq
55
tagAlign
47
bigWig
31
bed narrowPeak
13
tsv
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bedpe bed3+
2
bigBed bedMethyl
2
bigBed broadPeak
2
hic
1
csv
1
hdf5
1
vcf
Organism
227
Homo sapiens
Biosample type
143
tissue
81
cell line
3
primary cell
1
in vitro differentiated cells
Organ
311
pancreas
230
epithelium
208
liver
148
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
209
AMP
19
LungMap
Genome assembly (visualization)
296
hg19
GRCh38
Lab
149
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
Audit category:
2
inconsistent control read length
target.investigated_as!
transcription factor
assembly!
GRCh38
BIOSAMPLE
ASSAY
228 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
tissue
liver
70
20
20
1
1
3
1
1
lung
9
10
1
right lobe of liver
3
1
1
1
cell line
HepG2
65
9
2
2
2
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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