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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
1
DNase-seq
Assay category
14
DNA binding
1
DNA accessibility
Target of assay
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
14
November, 2017
1
October, 2019
Available data
233
bam
166
bigWig
119
tsv
90
fastq
52
bed narrowPeak
27
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
15
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
15
Homo sapiens
Biosample type
213
tissue
44
primary cell
15
cell line
1
in vitro differentiated cells
Organ
14
liver
1
pancreas
Project
15
AMP
Genome assembly (visualization)
15
hg19
13
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
11
inconsistent control read length
target.investigated_as!
transcription factor
assembly!
hg18
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
DNase-seq
cell line
HepG2
14
Panc1
1
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