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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
25
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
21
August, 2017
3
November, 2017
2
October, 2019
1
March, 2019
Available data
391
bam
360
fastq
200
tsv
186
bigWig
161
txt
153
zippedFastqFolder
152
tagAlign
141
bed narrowPeak
27
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
11
bigBed narrowPeak
10
bed bed3
8
csv
7
bed bedgraph
5
bigBed broadPeak
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
27
Homo sapiens
Biosample type
22
tissue
3
primary cell
2
cell line
Organ
13
musculature of body
7
pancreas
2
blood vessel
2
epithelium
2
liver
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
27
AMP
Genome assembly (visualization)
249
hg19
GRCh38
Lab
26
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
target.investigated_as!
transcription factor
assembly!
hg18
GRCh38
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
cell line
HepG2
2
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