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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
28
ChIP-seq
21
ATAC-seq
1
pCHi-C
Assay category
127
Transcription
28
DNA binding
21
DNA accessibility
Target of assay
22
histone
22
histone modification
transcription factor
12
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
662
February, 2021
307
August, 2017
304
August, 2021
273
October, 2019
194
May, 2020
177
May, 2021
163
June, 2019
156
November, 2017
120
July, 2018
117
February, 2023
111
May, 2019
77
July, 2019
74
April, 2019
66
May, 2022
63
March, 2020
60
November, 2019
59
October, 2018
52
December, 2017
47
September, 2023
39
February, 2018
25
February, 2020
23
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
15
May, 2023
10
November, 2020
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
3
January, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
128
bigWig
124
bam
121
tsv
2
bed narrowPeak
2
tagAlign
Organism
177
Homo sapiens
Biosample type
primary cell
116
in vitro differentiated cells
40
tissue
21
cell line
Organ
60
pancreas
25
epithelium
3
heart
2
embryo
1
connective tissue
1
thymus
Project
175
AMP
2
T1D
Genome assembly (visualization)
128
hg19
123
GRCh38
Lab
140
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
target.investigated_as!
transcription factor
assembly!
hg18
biosample_type!
primary cell
BIOSAMPLE
ASSAY
177 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
5
25
5
induced pluripotent stem cell
9
pancreatic PP cell
2
cardiac fibroblast
1
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tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
1
16
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