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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
40
ATAC-seq
5
pCHi-C
4
ChIP-seq
4
DNase-seq
1
RRBS
Assay category
81
Transcription
44
DNA accessibility
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
transcription factor
Date released
150
February, 2021
39
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
1
May, 2021
Available data
88
txt
72
bam
63
bigWig
63
tsv
40
bed narrowPeak
5
bigBed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
219
Homo sapiens
Biosample type
214
tissue
5
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
33
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
218
AMP
1
T1D
Genome assembly (visualization)
103
hg19
71
GRCh38
Lab
218
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
transcription factor
assembly!
hg18
BIOSAMPLE
ASSAY
219 results
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RNA microarray
total RNA-seq
ATAC-seq
pCHi-C
ChIP-seq
DNase-seq
RRBS
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
1
4
2
retina
3
15
3
pigmented layer of retina
2
12
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primary cell
retinal pigment epithelial cell
2
1
1
megakaryocyte
1
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