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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
290
ChIP-seq
Assay category
290
DNA binding
Target of assay
226
histone
226
histone modification
129
narrow histone mark
97
broad histone mark
64
control
transcription factor
Date released
85
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
2
May, 2021
Available data
2492
bam
2325
bigWig
1385
tsv
1210
bed narrowPeak
814
fastq
610
bigBed narrowPeak
290
tagAlign
258
bed broadPeak
251
bed bed3+
221
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
283
Homo sapiens
Biosample type
238
tissue
36
in vitro differentiated cells
16
primary cell
cell line
Organ
118
brain
74
liver
22
connective tissue
18
pancreas
15
musculature of body
8
adipose tissue
6
epithelium
1
pituitary gland
Project
290
AMP
T1D
Genome assembly (visualization)
144
GRCh38
133
hg19
Lab
290
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
target.investigated_as!
transcription factor
award.project!
T1D
biosample_type!
cell line
BIOSAMPLE
ASSAY
290 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
pancreatic PP cell
2
primary cell
skeletal muscle myoblast
12
hepatocyte
4
See all biosamples
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