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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
29
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
26
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
February, 2020
2
June, 2019
Available data
97
bam
80
bigWig
69
bed narrowPeak
56
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
134
Homo sapiens
Biosample type
70
tissue
62
cell line
2
primary cell
Organ
892
pancreas
641
connective tissue
511
epithelium
472
adipose tissue
452
liver
373
heart
344
kidney
271
brain
224
vasculature
219
blood vessel
158
bone element
134
artery
119
limb
94
musculature of body
59
eye
42
nerve
34
embryo
22
vein
20
lung
19
spleen
18
ureter
16
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
134
AMP-T2D consortium
target.investigated_as!
transcription factor
award.project!
T1D
month_released!
February, 2020
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
4
2
tibial artery
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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