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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
29
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
4
DNase-seq
1
pCHi-C
Assay category
67
Transcription
59
DNA accessibility
29
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
26
October, 2019
19
April, 2020
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
97
bam
80
bigWig
69
bed narrowPeak
59
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
155
Homo sapiens
Biosample type
92
tissue
62
cell line
2
primary cell
Organ
893
pancreas
643
connective tissue
511
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
158
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
ureter
16
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
137
AMP
19
LungMap
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
137
AMP-T2D consortium
19
Xin Sun, UCSD
target.investigated_as!
transcription factor
award.project!
T1D
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
lung
9
10
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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