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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
216
DNA binding
69
DNA accessibility
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
46
September, 2018
43
June, 2019
31
August, 2017
21
October, 2019
5
September, 2017
3
August, 2021
3
May, 2019
3
November, 2017
2
November, 2020
1
February, 2021
Available data
603
bigWig
599
bam
404
fastq
285
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
285
Homo sapiens
Biosample type
909
tissue
285
primary cell
100
in vitro differentiated cells
52
cell line
2
stem cell
Organ
101
epithelium
68
pancreas
20
kidney
19
vasculature
16
blood vessel
16
connective tissue
13
vein
9
musculature of body
8
brain
6
liver
5
heart
2
eye
Project
201
AMP
84
T1D
Genome assembly (visualization)
278
hg19
252
GRCh38
Lab
171
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
285 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
skeletal muscle myoblast
12
2
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